farmer
Primary_assembly 3L: 5,538,411-5,551,159 reverse strand.
BDGP6.32:AE014296.5
This gene has 10 transcripts (splice variants) and 47 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| frm-RH | FBtr0273231 | 4234 | 1180aa | FBpp0271739 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z0B9 | NM_001144415 NM_001144415.3 NP_001137887 NP_001137887.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| frm-RE | FBtr0113144 | 3580 | 652aa | FBpp0112057 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q86NR7 | NM_001104040 NM_001104040.2 NP_001097510 NP_001097510.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| frm-RC | FBtr0077139 | 3482 | 682aa | FBpp0076845 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VRM2 | NM_168120.4 NM_168121 NM_168121.4 NP_729074.1 NP_729075 NP_729075.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| frm-RB | FBtr0077140 | 3441 | 682aa | FBpp0076846 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VRM2 | NM_168120 NM_168120.4 NM_168121.4 NP_729074 NP_729074.1 NP_729075.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| frm-RJ | FBtr0273233 | 3171 | 752aa | FBpp0271741 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z0B7 | NM_001144417 NM_001144417.3 NP_001137889 NP_001137889.1 | - |
| frm-RI | FBtr0273232 | 2992 | 766aa | FBpp0271740 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z0B8 | NM_001144416 NM_001144416.3 NP_001137888 NP_001137888.1 | - |
| frm-RD | FBtr0077138 | 2428 | 268aa | FBpp0076844 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8T018 | NM_139713.5 NM_168119 NM_168119.4 NP_647970.1 NP_729073 NP_729073.1 | - |
| frm-RA | FBtr0077137 | 2212 | 268aa | FBpp0076843 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8T018 | NM_139713 NM_139713.5 NM_168119.4 NP_647970 NP_647970.1 NP_729073.1 | - |
| frm-RG | FBtr0113146 | 676 | 53aa | FBpp0112059 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JNL3 | NM_001104042 NM_001104042.3 NM_001144418.3 NP_001097512 NP_001097512.1 NP_001137890.1 | - |
| frm-RK | FBtr0273234 | 447 | 53aa | FBpp0271742 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JNL3 | NM_001104042.3 NM_001144418 NM_001144418.3 NP_001097512.1 NP_001137890 NP_001137890.1 | - |
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