Summary
- Splice variants
- Transcript comparison
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Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- GO: Molecular function
- GO: Biological process
- GO: Cellular component
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: frm FBgn0035612

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Description

farmer

Location

Primary_assembly 3L: 5,538,411-5,551,159 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 10 transcripts (splice variants) and 44 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
frm-RH	FBtr0273231	4234	1180aa	FBpp0271739	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0B9	NM_001144415 NM_001144415.3 NP_001137887 NP_001137887.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
frm-RE	FBtr0113144	3580	652aa	FBpp0112057	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86NR7	NM_001104040 NM_001104040.2 NP_001097510 NP_001097510.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
frm-RC	FBtr0077139	3482	682aa	FBpp0076845	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRM2	NM_168120.4 NM_168121 NM_168121.4 NP_729074.1 NP_729075 NP_729075.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
frm-RB	FBtr0077140	3441	682aa	FBpp0076846	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRM2	NM_168120 NM_168120.4 NM_168121.4 NP_729074 NP_729074.1 NP_729075.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
frm-RJ	FBtr0273233	3171	752aa	FBpp0271741	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0B7	NM_001144417 NM_001144417.3 NP_001137889 NP_001137889.1
frm-RI	FBtr0273232	2992	766aa	FBpp0271740	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0B8	NM_001144416 NM_001144416.3 NP_001137888 NP_001137888.1
frm-RD	FBtr0077138	2428	268aa	FBpp0076844	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T018	NM_139713.5 NM_168119 NM_168119.4 NP_647970.1 NP_729073 NP_729073.1
frm-RA	FBtr0077137	2212	268aa	FBpp0076843	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T018	NM_139713 NM_139713.5 NM_168119.4 NP_647970 NP_647970.1 NP_729073.1
frm-RG	FBtr0113146	676	53aa	FBpp0112059	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNL3	NM_001104042 NM_001104042.3 NM_001144418.3 NP_001097512 NP_001097512.1 NP_001137890.1
frm-RK	FBtr0273234	447	53aa	FBpp0271742	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNL3	NM_001104042.3 NM_001144418 NM_001144418.3 NP_001097512.1 NP_001137890 NP_001137890.1

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Summary

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Gene-based displays