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DB built by FlyBase

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Gene: TrpA1 FBgn0035934

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Description

Transient receptor potential cation channel A1

Location

Primary_assembly 3L: 8,894,404-8,905,200 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 5 transcripts (splice variants), 103 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
TrpA1-RG	FBtr0331823	4573	1232aa	FBpp0304207	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G8IQ59 G9L8C4	NM_001274671 NM_001274671.1 NP_001261600 NP_001261600.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
TrpA1-RH	FBtr0331824	4570	1231aa	FBpp0304208	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0USS9	NM_001274672 NM_001274672.1 NP_001261601 NP_001261601.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
TrpA1-RK	FBtr0331827	4462	1195aa	FBpp0304211	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBX8	NM_001274673 NM_001274673.1 NP_001261602 NP_001261602.1
TrpA1-RI	FBtr0331825	4259	1197aa	FBpp0304209	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7Z020	NM_001104084.4 NM_140006 NM_140006.5 NP_001097554.4 NP_648263 NP_648263.5	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
TrpA1-RJ	FBtr0331826	4256	1196aa	FBpp0304210	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0UST1	NM_001104084 NM_001104084.4 NP_001097554 NP_001097554.4	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT1

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Summary

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Gene-based displays