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DB built by FlyBase

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Gene: TrpA1 FBgn0035934

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Description

Transient receptor potential cation channel A1

Gene Synonyms

Location

Primary_assembly 3L: 8,894,404-8,905,200 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 5 transcripts (splice variants), 118 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
TrpA1-RG	FBtr0331823	4573	1232aa	FBpp0304207	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G8IQ59 G9L8C4	NM_001274671 NM_001274671.1 NP_001261600 NP_001261600.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
TrpA1-RH	FBtr0331824	4570	1231aa	FBpp0304208	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0USS9	NM_001274672 NM_001274672.1 NP_001261601 NP_001261601.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
TrpA1-RK	FBtr0331827	4462	1195aa	FBpp0304211	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBX8	NM_001274673 NM_001274673.1 NP_001261602 NP_001261602.1	-
TrpA1-RI	FBtr0331825	4259	1197aa	FBpp0304209	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7Z020	NM_001104084.4 NM_140006 NM_140006.5 NP_001097554.4 NP_648263 NP_648263.5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
TrpA1-RJ	FBtr0331826	4256	1196aa	FBpp0304210	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0UST1	NM_001104084 NM_001104084.4 NP_001097554 NP_001097554.4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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Gene-based displays