Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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DB built by FlyBase

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Gene: CG5087 FBgn0035953

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Gene Synonyms

Location

Primary_assembly 3L: 8,998,184-9,002,566 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 138 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5087-RA	FBtr0076520	3945	1078aa	FBpp0076247	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NNZ7 Q9VSS9	NM_140022 NM_140022.2 NP_648279 NP_648279.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5087-RB	FBtr0333908	3942	1077aa	FBpp0306037	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEV2	NM_001274681 NM_001274681.1 NP_001261610 NP_001261610.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays