Pop2
Primary_assembly 3L: 11,998,398-12,002,915 reverse strand.
BDGP6.32:AE014296.5
This gene has 7 transcripts (splice variants) and 189 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Pop2-RE | FBtr0344758 | 1750 | 361aa | FBpp0311089 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | X2JCC3 | NM_001300112 NM_001300112.1 NP_001287041 NP_001287041.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| Pop2-RB | FBtr0076059 | 1893 | 293aa | FBpp0075791 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8I0I5 | NM_168484 NM_168484.2 NM_168485.2 NP_729775 NP_729775.1 NP_729776.1 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| Pop2-RC | FBtr0076060 | 1827 | 293aa | FBpp0075792 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8I0I5 | NM_168484.2 NM_168485 NM_168485.2 NP_729775.1 NP_729776 NP_729776.1 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| Pop2-RA | FBtr0076058 | 1688 | 297aa | FBpp0075790 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VTS4 | NM_140281 NM_140281.3 NP_648538 NP_648538.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Pop2-RG | FBtr0479823 | 1688 | 341aa | FBpp0428156 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6M3Q6V5 Q8IGD6 | - | - |
| Pop2-RF | FBtr0479822 | 1688 | 297aa | FBpp0428155 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VTS4 | NM_140281.3 NP_648538.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Pop2-RD | FBtr0300272 | 1489 | 357aa | FBpp0289500 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JHY7 Q8MR41 | NM_001169958 NM_001169958.2 NP_001163429 NP_001163429.1 | - |
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