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DB built by FlyBase

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Gene: sowah FBgn0036302

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Description

sosondowah

Gene Synonyms

Location

Primary_assembly 3L: 12,537,513-12,572,542 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 4 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sowah-RG	FBtr0300888	2749	780aa	FBpp0290110	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0B0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sowah-RH	FBtr0300887	2360	527aa	FBpp0290109	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0A9 Q8T9J1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
sowah-RI	FBtr0300889	2314	635aa	FBpp0290111	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NH68 Q960W9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sowah-RJ	FBtr0332042	1964	548aa	FBpp0304352	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0B1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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