Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: cocoon FBgn0036496

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Description

cocoon

Gene Synonyms

Location

Primary_assembly 3L: 15,472,197-15,474,110 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 192 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
cocoon-RB	FBtr0332815	1782	318aa	FBpp0305038	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUN2	NM_001274945 NM_001274945.1 NM_140507.1 NP_001261874 NP_001261874.1 NP_648764.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
cocoon-RA	FBtr0075617	1722	318aa	FBpp0075370	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUN2	NM_001274945.1 NM_140507 NM_140507.1 NP_001261874.1 NP_648764 NP_648764.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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