Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: CG5235 FBgn0036565

.

Location

Primary_assembly 3L: 16,087,627-16,090,392 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 102 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5235-RA	FBtr0075497	2711	698aa	FBpp0075252	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFT8 Q9VUY0	NM_001274992.2 NM_140576 NM_140576.4 NP_001261921.1 NP_648833 NP_648833.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG5235-RB	FBtr0333599	2521	698aa	FBpp0305776	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFT8 Q9VUY0	NM_001274992 NM_001274992.2 NM_140576.4 NP_001261921 NP_001261921.1 NP_648833.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

.

Summary

.

.

Gene-based displays