Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG2519 FBgn0037336

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Location

Primary_assembly 3R: 5,539,510-5,547,775 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 87 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG2519-RA	FBtr0078761	5665	1304aa	FBpp0078408	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VNC9	NM_141289 NM_141289.3 NP_649546 NP_649546.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG2519-RC	FBtr0336771	5863	1280aa	FBpp0307747	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTS3	NM_001275357 NM_001275357.1 NM_206431.2 NP_001262286 NP_001262286.1 NP_996153.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG2519-RB	FBtr0078762	5593	1280aa	FBpp0078409	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTS3	NM_001275357.1 NM_206431 NM_206431.2 NP_001262286.1 NP_996153 NP_996153.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays