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- Splice variants
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DB built by FlyBase

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Gene: Sys1 FBgn0037603

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Description

Sys1 golgi trafficking protein

Gene Synonyms

Location

Primary_assembly 3R: 8,652,821-8,653,847 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 68 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Sys1-RA	FBtr0081879	699	160aa	FBpp0081368	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHP1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Sys1-RC	FBtr0334317	801	159aa	FBpp0306431	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFH6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Sys1-RB	FBtr0310655	696	159aa	FBpp0302775	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFH6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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