Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
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ID History
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DB built by FlyBase

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Gene: pasi2 FBgn0037680

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Description

pasiflora 2

Gene Synonyms

Location

Primary_assembly 3R: 9,335,170-9,337,459 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 86 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
pasi2-RA	FBtr0082017	1504	258aa	FBpp0081495	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHF5	NM_141626 NM_141626.2 NM_169266.2 NM_169267.2 NP_649883 NP_649883.1 NP_731333.1 NP_731334.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
pasi2-RB	FBtr0082019	1473	258aa	FBpp0081497	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHF5	NM_141626.2 NM_169266 NM_169266.2 NM_169267.2 NP_649883.1 NP_731333 NP_731333.1 NP_731334.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
pasi2-RC	FBtr0082018	1298	258aa	FBpp0081496	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHF5	NM_141626.2 NM_169266.2 NM_169267 NM_169267.2 NP_649883.1 NP_731333.1 NP_731334 NP_731334.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays