Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Metazoan Compara
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DB built by FlyBase

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Gene: CG9399 FBgn0037715

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Gene Synonyms

Location

Primary_assembly 3R: 9,571,911-9,574,211 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 185 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG9399-RA	FBtr0082110	1147	154aa	FBpp0081588	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHB1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG9399-RE	FBtr0334657	1108	120aa	FBpp0306719	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFZ7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG9399-RD	FBtr0334656	1017	154aa	FBpp0306718	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHB1	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG9399-RB	FBtr0082109	1008	154aa	FBpp0081587	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHB1	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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