Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
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DB built by FlyBase

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Gene: sea FBgn0037912

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Description

scheggia

Gene Synonyms

Location

Primary_assembly 3R: 11,559,896-11,567,054 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 52 orthologues and 44 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sea-RD	FBtr0100464	1660	317aa	FBpp0099890	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSQ0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
sea-RE	FBtr0100465	1444	317aa	FBpp0099892	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSQ0	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
sea-RC	FBtr0100462	1347	317aa	FBpp0099889	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSQ0	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
sea-RA	FBtr0100461	1318	317aa	FBpp0099888	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSQ0	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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