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- Splice variants
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DB built by FlyBase

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Gene: Elp1 FBgn0037926

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Description

Elongator complex protein 1

Gene Synonyms

Location

Primary_assembly 3R: 11,650,971-11,655,691 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 190 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Elp1-RC	FBtr0335448	4312	1256aa	FBpp0307426	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFR6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Elp1-RB	FBtr0335447	3921	1253aa	FBpp0307425	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGU0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Elp1-RA	FBtr0082420	3918	1252aa	FBpp0081896	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H1UUI3 Q5BID1 Q9VGK7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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