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DB built by FlyBase

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Gene: Sur-8 FBgn0038504

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Description

Sur-8

Gene Synonyms

Location

Primary_assembly 3R: 17,395,199-17,402,515 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 131 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Sur-8-RE	FBtr0339531	4537	694aa	FBpp0308614	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHA2	NM_001275736 NM_001275736.1 NP_001262665 NP_001262665.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Sur-8-RA	FBtr0083447	4537	641aa	FBpp0082888	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHN4 Q9VEK6	NM_001275735.1 NM_142363.7 NM_169758 NM_169758.4 NP_001262664.1 NP_650620.3 NP_732231 NP_732231.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sur-8-RB	FBtr0083448	4309	641aa	FBpp0082889	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHN4 Q9VEK6	NM_001275735.1 NM_142363 NM_142363.7 NM_169758.4 NP_001262664.1 NP_650620 NP_650620.3 NP_732231.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sur-8-RF	FBtr0339532	2842	641aa	FBpp0308615	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHN4 Q9VEK6	NM_001275735 NM_001275735.1 NM_142363.7 NM_169758.4 NP_001262664 NP_001262664.1 NP_650620.3 NP_732231.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays