Syncrip
Primary_assembly 3R: 20,756,729-20,810,726 forward strand.
BDGP6.32:AE014297.3
This gene has 20 transcripts (splice variants), 179 orthologues and 17 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Syp-RJ | FBtr0334712 | 2610 | 761aa | FBpp0306764 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KHT5 | NM_001275848 NM_001275848.1 NP_001262777 NP_001262777.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RB | FBtr0083959 | 8675 | 711aa | FBpp0083366 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KSA0 | NM_001104378.2 NM_142656 NM_142656.4 NP_001097848.2 NP_650913 NP_650913.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RK | FBtr0334713 | 7374 | 753aa | FBpp0306765 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KHH8 | NM_001275849 NM_001275849.1 NP_001262778 NP_001262778.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RF | FBtr0083961 | 6794 | 529aa | FBpp0083368 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V364 | NM_169929 NM_169929.3 NP_732559 NP_732559.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RE | FBtr0083963 | 6543 | 571aa | FBpp0083370 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IN48 | NM_169925 NM_169925.3 NP_732555 NP_732555.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RN | FBtr0334716 | 4732 | 665aa | FBpp0306768 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KGF9 | NM_001275851 NM_001275851.1 NM_001275853.1 NP_001262780 NP_001262780.1 NP_001262782.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RR | FBtr0334720 | 4448 | 569aa | FBpp0306772 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KGK8 | NM_001275855 NM_001275855.1 NP_001262784 NP_001262784.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RM | FBtr0334715 | 3407 | 699aa | FBpp0306767 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KGK5 | NM_001275850 NM_001275850.1 NP_001262779 NP_001262779.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RS | FBtr0473514 | 3407 | 699aa | FBpp0423032 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4D6K4U6 | NM_001369986 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RP | FBtr0334718 | 3397 | 665aa | FBpp0306770 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KGF9 Q5U0U3 | NM_001275851.1 NM_001275853 NM_001275853.1 NP_001262780.1 NP_001262782 NP_001262782.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RD | FBtr0083962 | 3146 | 707aa | FBpp0083369 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C6SV30 Q86NT3 Q9VDI8 | NM_169926 NM_169926.2 NP_732556 NP_732556.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RT | FBtr0473515 | 3145 | 670aa | FBpp0423033 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4D6K1Z7 | NM_001369987 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RI | FBtr0334711 | 3123 | 603aa | FBpp0306763 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KH21 | NM_001275847 NM_001275847.1 NP_001262776 NP_001262776.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RV | FBtr0473516 | 2884 | 678aa | FBpp0423034 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4D6K3P4 | NM_001369988 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RO | FBtr0334717 | 2862 | 611aa | FBpp0306769 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KH24 | NM_001275852 NM_001275852.1 NP_001262781 NP_001262781.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RL | FBtr0334714 | 2837 | 711aa | FBpp0306766 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KSA0 | NM_001104378 NM_001104378.2 NM_142656.4 NP_001097848 NP_001097848.2 NP_650913.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RC | FBtr0083960 | 2740 | 529aa | FBpp0083367 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q95TW4 | NM_169928 NM_169928.3 NP_732558 NP_732558.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RQ | FBtr0334719 | 2610 | 761aa | FBpp0306771 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KHI4 | NM_001275854 NM_001275854.1 NP_001262783 NP_001262783.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Syp-RA | FBtr0083958 | 2301 | 563aa | FBpp0083365 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IN47 | NM_169927 NM_169927.3 NP_732557 NP_732557.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Syp-RH | FBtr0113256 | 2214 | 534aa | FBpp0112168 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JR54 E8NH05 | NM_001104379 NM_001104379.2 NP_001097849 NP_001097849.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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