Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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DB built by FlyBase

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Gene: CG13627 FBgn0039217

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Gene Synonyms

Location

Primary_assembly 3R: 24,712,780-24,717,430 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 44 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG13627-RA	FBtr0084686	2528	697aa	FBpp0084065	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6AWM4 Q9VC50	NM_143022 NM_143022.3 NP_651279 NP_651279.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG13627-RB	FBtr0084687	2410	697aa	FBpp0084066	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGT7 Q8IMV7	NM_170166 NM_170166.3 NP_733032 NP_733032.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG13627-RC	FBtr0339251	2270	611aa	FBpp0308358	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHL1 Q6AWM4 Q8IGT7	NM_001300580 NM_001300580.1 NP_001287509 NP_001287509.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays