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Summary
- Splice variants
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DB built by FlyBase

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Gene: CG1971 FBgn0039881

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Gene Synonyms

Location

Primary_assembly 3R: 31,805,468-31,806,769 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 37 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG1971-RA	FBtr0085847	1145	263aa	FBpp0085206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86NY9 Q9V9T0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG1971-RB	FBtr0085848	1106	212aa	FBpp0085207	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IMG0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG1971-RC	FBtr0305131	1034	212aa	FBpp0293661	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IMG0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG1971-RD	FBtr0344004	1028	212aa	FBpp0310456	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IMG0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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