Host cell factor
Primary_assembly 4: 359,938-375,554 forward strand.
BDGP6.32:AE014135.4
This gene has 5 transcripts (splice variants), 140 orthologues and 5 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Hcf-RG | FBtr0345284 | 7812 | 1500aa | FBpp0311451 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9V4C8 | NM_001258491.3 NM_079882.4 NM_166756.3 NM_166757.3 NM_205873 NM_205873.3 NP_001245420.1 NP_524621.2 NP_726566.1 NP_726567.2 NP_995595 NP_995595.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Hcf-RB | FBtr0089125 | 7231 | 1500aa | FBpp0088194 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9V4C8 | NM_001258491.3 NM_079882.4 NM_166756 NM_166756.3 NM_166757.3 NM_205873.3 NP_001245420.1 NP_524621.2 NP_726566 NP_726566.1 NP_726567.2 NP_995595.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Hcf-RE | FBtr0307379 | 5372 | 1484aa | FBpp0298368 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_001258491 NM_001258491.3 NP_001245420 NP_001245420.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Hcf-RA | FBtr0089126 | 5346 | 1500aa | FBpp0088195 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9V4C8 | NM_001258491.3 NM_079882 NM_079882.4 NM_166756.3 NM_166757.3 NM_205873.3 NP_001245420.1 NP_524621 NP_524621.2 NP_726566.1 NP_726567.2 NP_995595.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Hcf-RF | FBtr0334479 | 5190 | 1448aa | FBpp0306551 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_166757 NM_166757.3 NP_726567 NP_726567.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
![[twitter logo]](/i/twitter.png "Follow us on Twitter!")
