Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG12061 FBgn0040031

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Location

Primary_assembly X: 23,036,066-23,047,678 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 2 transcripts (splice variants), 84 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12061-RD	FBtr0332625	1471	441aa	FBpp0304871	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y5A2	NM_001110997 NM_001110997.2 NP_001104467 NP_001104467.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG12061-RF	FBtr0333740	1252	368aa	FBpp0305882	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7PLW3	NM_001015258 NM_001015258.2 NP_001015258 NP_001015258.3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays