Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
Supporting evidence
ID History
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DB built by FlyBase

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Gene: CG13643 FBgn0040601

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Location

Primary_assembly 3R: 24,897,685-24,906,004 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 71 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG13643-RD	FBtr0334572	3104	819aa	FBpp0306639	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHG9	NM_001276008 NM_001276008.1 NP_001262937 NP_001262937.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG13643-RB	FBtr0306798	3248	807aa	FBpp0297710	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VC14	NM_001276007.1 NM_143996 NM_143996.3 NP_001262936.1 NP_652253 NP_652253.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG13643-RC	FBtr0310462	3068	807aa	FBpp0302610	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VC14	NM_001276007 NM_001276007.1 NM_143996.3 NP_001262936 NP_001262936.1 NP_652253.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG13643-RE	FBtr0334573	3065	806aa	FBpp0306640	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KI11	NM_001276009 NM_001276009.1 NP_001262938 NP_001262938.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays