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DB built by FlyBase

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Gene: Atx2 FBgn0041188

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Description

Ataxin-2

Gene Synonyms

Location

Primary_assembly 3R: 15,408,423-15,417,277 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 118 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Atx2-RB	FBtr0083099	4533	1084aa	FBpp0082555	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SWR8	NM_001300410.1 NM_142209.3 NM_169657 NM_169657.3 NM_169658.3 NP_001287339.1 NP_650466.2 NP_732033 NP_732033.1 NP_732034.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Atx2-RC	FBtr0083100	4999	1023aa	FBpp0082556	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LH64	NM_001300410.1 NM_169658 NM_169658.3 NP_001287339.1 NP_732034 NP_732034.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Atx2-RD	FBtr0344377	4935	1023aa	FBpp0310750	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LH64	NM_001300410 NM_001300410.1 NM_169658.3 NP_001287339 NP_001287339.1 NP_732034.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Atx2-RA	FBtr0083101	4323	888aa	FBpp0082557	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_142209 NM_142209.3 NP_650466 NP_650466.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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