Histone deacetylase 4
Primary_assembly X: 13,262,687-13,285,632 reverse strand.
BDGP6.32:AE014298.5
This gene has 8 transcripts (splice variants), 136 orthologues and 4 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| HDAC4-RG | FBtr0333331 | 6876 | 1269aa | FBpp0305523 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PHQ2 | NM_001272578 NM_001272578.2 NP_001259507 NP_001259507.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| HDAC4-RI | FBtr0333333 | 6559 | 1205aa | FBpp0305525 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PJM2 | NM_001272580 NM_001272580.2 NM_001272581.2 NP_001259509 NP_001259509.1 NP_001259510.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| HDAC4-RH | FBtr0333332 | 6510 | 1181aa | FBpp0305524 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IR69 | NM_001272579 NM_001272579.2 NM_167356.3 NP_001259508 NP_001259508.1 NP_727682.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| HDAC4-RD | FBtr0301298 | 6312 | 1252aa | FBpp0290513 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I1V504 Q8I9J6 Q9VYF3 | NM_132640 NM_132640.6 NP_572868 NP_572868.3 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| HDAC4-RJ | FBtr0333334 | 6248 | 1205aa | FBpp0305526 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | L7X6C7 M9PJM2 | NM_001272580.2 NM_001272581 NM_001272581.2 NP_001259509.1 NP_001259510 NP_001259510.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| HDAC4-RF | FBtr0308576 | 5487 | 1242aa | FBpp0300800 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9NEF2 | NM_001258722 NM_001258722.3 NP_001245651 NP_001245651.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| HDAC4-RE | FBtr0301299 | 5299 | 1203aa | FBpp0290514 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I1V503 Q59E49 Q8I9J7 | NM_001014736 NM_001014736.5 NP_001014736 NP_001014736.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| HDAC4-RB | FBtr0073798 | 5182 | 1181aa | FBpp0073629 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8E6M3 I1V505 Q8IR69 | NM_001272579.2 NM_167356 NM_167356.3 NP_001259508.1 NP_727682 NP_727682.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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