Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
Supporting evidence
ID History
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DB built by FlyBase

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Gene: CG18815 FBgn0042138

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Location

Primary_assembly 3L: 11,628,037-11,630,749 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 5 transcripts (splice variants), 105 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG18815-RE	FBtr0331545	1136	232aa	FBpp0303935	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0PV64 M9PEW1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG18815-RD	FBtr0331544	1373	221aa	FBpp0303934	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0PDF4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG18815-RA	FBtr0076103	1247	216aa	FBpp0075834	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9I7R0	-	-
CG18815-RB	FBtr0076104	1237	216aa	FBpp0075835	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9I7R0	-	-
CG18815-RC	FBtr0076105	1181	216aa	FBpp0075836	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9I7R0	-	-

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Summary

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