Summary
- Splice variants
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Metazoan Compara
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DB built by FlyBase

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Gene: smog FBgn0051660

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Description

smog

Gene Synonyms

Location

Primary_assembly 2L: 4,852,864-4,876,792 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 5 transcripts (splice variants), 119 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
smog-RD	FBtr0304909	3644	951aa	FBpp0293448	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND25	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
smog-RF	FBtr0336831	5128	926aa	FBpp0307795	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEK9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
smog-RE	FBtr0304910	4340	894aa	FBpp0293449	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDF0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
smog-RB	FBtr0077388	3808	790aa	FBpp0077080	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86P57 Q9VR40	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
smog-RC	FBtr0100301	3586	944aa	FBpp0099696	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59E18	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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