smog
Primary_assembly 2L: 4,852,864-4,876,792 forward strand.
BDGP6.32:AE014134.6
This gene has 5 transcripts (splice variants), 106 orthologues and 2 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| smog-RD | FBtr0304909 | 3644 | 951aa | FBpp0293448 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9ND25 | NM_001258952 NM_001258952.2 NP_001245881 NP_001245881.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| smog-RF | FBtr0336831 | 5128 | 926aa | FBpp0307795 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PEK9 | NM_001273127 NM_001273127.1 NP_001260056 NP_001260056.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| smog-RE | FBtr0304910 | 4340 | 894aa | FBpp0293449 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9NDF0 | NM_001258953 NM_001258953.2 NP_001245882 NP_001245882.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| smog-RB | FBtr0077388 | 3808 | 790aa | FBpp0077080 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q86P57 Q9VR40 | NM_164600 NM_164600.4 NP_723019 NP_723019.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| smog-RC | FBtr0100301 | 3586 | 944aa | FBpp0099696 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q59E18 | NM_001014465 NM_001014465.3 NP_001014465 NP_001014465.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
![[twitter logo]](/i/twitter.png "Follow us on Twitter!")
