Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: Lasp FBgn0063485

.

Description

Lasp

Gene Synonyms

Location

Primary_assembly 3L: 16,676,406-16,711,677 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 119 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Lasp-RB	FBtr0100145	4413	657aa	FBpp0099495	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I7C3	NM_140655.3 NM_168681 NM_168681.4 NP_648912.2 NP_730192 NP_730192.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Lasp-RC	FBtr0306151	3189	636aa	FBpp0297281	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDA6	NM_001259869 NM_001259869.2 NP_001246798 NP_001246798.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lasp-RA	FBtr0075350	2793	504aa	FBpp0075109	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3DMV1	NM_140655 NM_140655.3 NP_648912 NP_648912.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lasp-RD	FBtr0306152	2127	282aa	FBpp0297282	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFH3	NM_001259870 NM_001259870.2 NP_001246799 NP_001246799.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.

Gene-based displays