Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: nub FBgn0085424

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Description

nubbin

Gene Synonyms

Location

Primary_assembly 2L: 12,587,625-12,628,135 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 3 transcripts (splice variants), 144 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
nub-RB	FBtr0112642	4497	961aa	FBpp0111554	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYZ8 Q2EJS5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
nub-RD	FBtr0112643	3267	601aa	FBpp0111555	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P31368 X2JDY7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nub-RE	FBtr0342628	2829	601aa	FBpp0309559	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P31368 X2JDY7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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