Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG42260 FBgn0259145

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Location

Primary_assembly 2R: 22,740,999-22,798,289 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 4 transcripts (splice variants), 179 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42260-RE	FBtr0474145	5685	1269aa	FBpp0423144	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4P7VAE4	NM_001370013	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42260-RB	FBtr0299573	7264	974aa	FBpp0288848	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W1Z8	NM_137873 NM_137873.3 NP_611717 NP_611717.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42260-RD	FBtr0330241	6102	1247aa	FBpp0303274	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGC3	NM_001274212 NM_001274212.1 NP_001261141 NP_001261141.1	-
CG42260-RA	FBtr0299572	5685	1249aa	FBpp0288847	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q058W8 Q1RKR2 Q9W201	NM_137871 NM_137871.4 NP_611715 NP_611715.3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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