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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: CG42331 FBgn0259233

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Gene Synonyms

Location

Primary_assembly 3R: 24,772,181-24,784,562 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 3 transcripts (splice variants), 36 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42331-RD	FBtr0304106	5053	1615aa	FBpp0293051	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4IJ50 Q9VC42	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG42331-RB	FBtr0299842	5039	1615aa	FBpp0289120	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VC42	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG42331-RC	FBtr0299843	4662	1439aa	FBpp0289121	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YU25 Q9VC41	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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