Summary
- Splice variants
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Metazoan Compara
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Pan-taxonomic Compara
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- GO: Cellular component
- GO: Biological process
- GO: Molecular function
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DB built by FlyBase

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Gene: CG42336 FBgn0259238

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Gene Synonyms

Location

Primary_assembly 2R: 11,294,536-11,297,520 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 5 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42336-RD	FBtr0299855	707	162aa	FBpp0289133	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZF1	NM_001144172 NM_001144172.2 NP_001137644 NP_001137644.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42336-RF	FBtr0303157	901	140aa	FBpp0292256	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z8I8	NM_001201978 NM_001201978.2 NM_136823.4 NP_001188907 NP_001188907.1 NP_610667.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42336-RC	FBtr0299854	747	138aa	FBpp0289132	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JWT7	NM_165820 NM_165820.2 NP_725026 NP_725026.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42336-RE	FBtr0299856	686	140aa	FBpp0289134	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z8I8	NM_001201978.2 NM_136823 NM_136823.4 NP_001188907.1 NP_610667 NP_610667.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42336-RB	FBtr0299853	509	65aa	FBpp0289131	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z8I6	NM_136824 NM_136824.4 NP_610668 NP_610668.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays