Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG42514 FBgn0260388

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Gene Synonyms

Location

Primary_assembly 3L: 16,491,838-16,496,236 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 132 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42514-RA	FBtr0300655	2150	533aa	FBpp0289879	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6TP72 Q0E8E1 Q8MZE0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42514-RC	FBtr0300657	2087	531aa	FBpp0289881	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q960A8 Q9I7R2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42514-RB	FBtr0300656	2064	533aa	FBpp0289880	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8E1	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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