Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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- Gene history

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DB built by FlyBase

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Gene: app FBgn0260941

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Location

Chromosome 3L: 12,206,238-12,266,841 reverse strand.

BDGP6.28:AE014296.5

About this gene

This gene has 10 transcripts (splice variants), 89 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	FBtr0301054	6652	755aa	FBpp0290276	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTV6	NM_140304.7 NM_206343.5 NP_648561.2 NP_996065.2	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
-	FBtr0301055	6630	755aa	FBpp0290277	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTV6	NM_140304.7 NM_206343.5 NP_648561.2 NP_996065.2	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
-	FBtr0301056	4559	693aa	FBpp0290278	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEY9	NM_001144464.2 NM_001144465.2 NM_001144466.3 NM_001144467.3 NM_001259802.2 NM_001259803.2 NM_001259804.2 NM_001300114.1 NP_001137936.1 NP_001137937.1 NP_001137938.2 NP_001137939.2 NP_001246731.2 NP_001246732.1 NP_001246733.2 NP_001287043.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0301057	4537	693aa	FBpp0290279	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEY9	NM_001144464.2 NM_001144465.2 NM_001144466.3 NM_001144467.3 NM_001259802.2 NM_001259803.2 NM_001259804.2 NM_001300114.1 NP_001137936.1 NP_001137937.1 NP_001137938.2 NP_001137939.2 NP_001246731.2 NP_001246732.1 NP_001246733.2 NP_001287043.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0339925	4505	693aa	FBpp0308957	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEY9	NM_001144464.2 NM_001144465.2 NM_001144466.3 NM_001144467.3 NM_001259802.2 NM_001259803.2 NM_001259804.2 NM_001300114.1 NP_001137936.1 NP_001137937.1 NP_001137938.2 NP_001137939.2 NP_001246731.2 NP_001246732.1 NP_001246733.2 NP_001287043.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0304661	4422	382aa	FBpp0293203	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_001259803.2 NP_001246732.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0334102	4156	693aa	FBpp0306224	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEY9	NM_001144464.2 NM_001144465.2 NM_001144466.3 NM_001144467.3 NM_001259802.2 NM_001259803.2 NM_001259804.2 NM_001300114.1 NP_001137936.1 NP_001137937.1 NP_001137938.2 NP_001137939.2 NP_001246731.2 NP_001246732.1 NP_001246733.2 NP_001287043.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0301052	2889	398aa	FBpp0290274	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NLJ6	NM_001144466.3 NM_001144467.3 NP_001137938.2 NP_001137939.2
-	FBtr0301053	2867	398aa	FBpp0290275	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_001144466.3 NM_001144467.3 NP_001137938.2 NP_001137939.2
-	FBtr0334103	2679	476aa	FBpp0306225	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SY85	NM_001259804.2 NP_001246733.2

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Summary

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Gene-based displays