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DB built by FlyBase

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Gene: Xrp1 FBgn0261113

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Description

Xrp1

Gene Synonyms

Location

Primary_assembly 3R: 18,914,968-18,926,989 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 7 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Xrp1-RB	FBtr0083700	3619	668aa	FBpp0083114	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VE23	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Xrp1-RF	FBtr0334523	3196	668aa	FBpp0306590	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T9G5 Q9VE23	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Xrp1-RG	FBtr0334524	3167	668aa	FBpp0306591	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VE23	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Xrp1-RA	FBtr0083701	3027	668aa	FBpp0083115	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VE23	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Xrp1-RC	FBtr0083702	2120	406aa	FBpp0083116	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I0S0 Q8IN74	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Xrp1-RE	FBtr0113246	2030	406aa	FBpp0112158	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IN74	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Xrp1-RD	FBtr0083703	1740	406aa	FBpp0083117	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IN74	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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