Summary
- Splice variants
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DB built by FlyBase

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Gene: CG42748 FBgn0261802

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Location

Primary_assembly 2L: 22,131,221-22,166,221 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 11 transcripts (splice variants) and 45 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42748-RK	FBtr0333743	9304	2190aa	FBpp0305885	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDE6	NM_001273755 NM_001273755.1 NP_001260684 NP_001260684.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42748-RG	FBtr0303277	10534	2139aa	FBpp0292369	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R9PY70	NM_001103720 NM_001103720.3 NP_001097190 NP_001097190.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42748-RM	FBtr0333745	6913	1636aa	FBpp0305887	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDL8	NM_001273757 NM_001273757.1 NP_001260686 NP_001260686.1	-
CG42748-RB	FBtr0303271	6880	1710aa	FBpp0292363	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V9N7	NM_136290.4 NM_165411 NM_165411.3 NP_610134.2 NP_724384 NP_724384.1	-
CG42748-RD	FBtr0303273	6732	1639aa	FBpp0292365	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DZ24	NM_001103718 NM_001103718.3 NP_001097188 NP_001097188.1	-
CG42748-RJ	FBtr0333742	6550	1717aa	FBpp0305884	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBG0	NM_001273754 NM_001273754.1 NP_001260683 NP_001260683.1	-
CG42748-RC	FBtr0303272	6348	1710aa	FBpp0292364	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V9N7	NM_136290 NM_136290.4 NM_165411.3 NP_610134 NP_610134.2 NP_724384.1	-
CG42748-RL	FBtr0333744	5823	822aa	FBpp0305886	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDY6	NM_001273756 NM_001273756.1 NP_001260685 NP_001260685.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42748-RF	FBtr0303275	4450	413aa	FBpp0292367	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEE9 M9MSJ5	NM_001201933 NM_001201933.1 NP_001188862 NP_001188862.1	-
CG42748-RH	FBtr0303276	4308	778aa	FBpp0292368	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V9N5	NM_136292 NM_136292.2 NP_610136 NP_610136.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42748-RE	FBtr0303274	3774	349aa	FBpp0292366	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DZ25	NM_001103719 NM_001103719.4 NP_001097189 NP_001097189.2	-

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Summary

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Gene-based displays