Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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DB built by FlyBase

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Gene: f FBgn0262111

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Description

forked

Gene Synonyms

Location

Primary_assembly X: 17,232,942-17,280,964 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 9 transcripts (splice variants), 128 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
f-RF	FBtr0304061	6422	1918aa	FBpp0293023	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KHR2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
f-RH	FBtr0304067	6180	1790aa	FBpp0293029	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MSB2	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
f-RJ	FBtr0304069	5951	1761aa	FBpp0293031	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MSB3 Q24339	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
f-RC	FBtr0304065	5587	1509aa	FBpp0293027	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86B49	-	-
f-RI	FBtr0304068	5485	1544aa	FBpp0293030	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MSQ2	-	-
f-RB	FBtr0304062	5476	1436aa	FBpp0293024	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q24341 Q9VX60	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
f-RD	FBtr0304064	4968	1436aa	FBpp0293026	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VX60	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
f-RK	FBtr0344942	2540	608aa	FBpp0311215	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q24340 Q9VX59	-	-
f-RG	FBtr0304066	1850	413aa	FBpp0293028	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86B48	-	-

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Summary

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