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DB built by FlyBase

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Gene: 5-HT1B FBgn0263116

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Description

5-hydroxytryptamine (serotonin) receptor 1B

Gene Synonyms

Location

Primary_assembly 2R: 19,022,325-19,032,642 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 3 transcripts (splice variants), 88 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
5-HT1B-RE	FBtr0330056	4026	629aa	FBpp0303089	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P28286	NM_001144236 NP_001137708	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
5-HT1B-RD	FBtr0330055	3861	562aa	FBpp0303088	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGM2	NM_001169730 NM_001169730.3 NP_001163201 NP_001163201.2	-
5-HT1B-RA	FBtr0086599	2980	617aa	FBpp0085783	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P28286	NM_001144236.2 NM_079065 NM_079065.6 NP_001137708.2 NP_523789 NP_523789.3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays