Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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DB built by FlyBase

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Gene: CG43394 FBgn0263256

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Location

Primary_assembly 2L: 8,145,758-8,158,786 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 5 transcripts (splice variants) and 76 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG43394-RB	FBtr0308299	3496	948aa	FBpp0300618	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCI1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG43394-RC	FBtr0330321	3186	948aa	FBpp0303353	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCI1 Q1RKW7	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG43394-RA	FBtr0308298	2675	537aa	FBpp0300617	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPG6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43394-RE	FBtr0344862	2468	525aa	FBpp0311177	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J9V7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43394-RD	FBtr0339672	2365	537aa	FBpp0308729	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPG6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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