Summary
- Splice variants
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DB built by FlyBase

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Gene: orb2 FBgn0264307

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Description

orb2

Gene Synonyms

Location

Primary_assembly 3L: 8,937,100-8,954,463 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 7 transcripts (splice variants), 12 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
orb2-RJ	FBtr0474158	4187	769aa	FBpp0423157	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K616	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
orb2-RH	FBtr0331515	8400	704aa	FBpp0303905	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1P2 Q9VSR3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
orb2-RD	FBtr0331514	6425	704aa	FBpp0303904	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1P2 C8VV27 Q9VSR3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
orb2-RK	FBtr0474159	4187	709aa	FBpp0423158	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K784	-	-
orb2-RC	FBtr0331513	4187	704aa	FBpp0303903	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1P2 Q9VSR3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
orb2-RB	FBtr0331512	3116	704aa	FBpp0303902	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V1P2 Q9VSR3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
orb2-RA	FBtr0331511	2098	551aa	FBpp0303901	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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