Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: CG43861 FBgn0264443

.

Location

Primary_assembly 2L: 19,968,684-20,017,282 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 4 transcripts (splice variants) and 77 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG43861-RC	FBtr0332566	2686	568aa	FBpp0304823	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDT0	NM_001273686 NM_001273686.1 NP_001260615 NP_001260615.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG43861-RD	FBtr0345432	3486	470aa	FBpp0311557	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0PUY5 Q9VIQ2	NM_001299164 NM_001299164.1 NM_136173.3 NP_001286093 NP_001286093.1 NP_610017.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43861-RB	FBtr0332565	2907	422aa	FBpp0304822	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0PUW4	NM_001169548 NM_001169548.1 NP_001163019 NP_001163019.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43861-RA	FBtr0332564	2686	470aa	FBpp0304821	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VIQ2	NM_001299164.1 NM_136173 NM_136173.3 NP_001286093.1 NP_610017 NP_610017.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.