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- Splice variants
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DB built by FlyBase

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Gene: CG45263 FBgn0266801

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Location

Primary_assembly 3R: 8,364,328-8,477,617 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 6 transcripts (splice variants) and 14 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG45263-RE	FBtr0345460	9306	1876aa	FBpp0311578	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHR2	NM_169222 NM_169222.3 NP_731246 NP_731246.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG45263-RG	FBtr0346729	9306	711aa	FBpp0312338	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUS1	NM_001316569 NM_001316569.1 NP_001303498 NP_001303498.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG45263-RC	FBtr0345458	5565	1148aa	FBpp0311576	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K609 D3DMG5	NM_001260059 NM_001260059.2 NP_001246988 NP_001246988.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG45263-RD	FBtr0345459	5385	1034aa	FBpp0311577	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K642 Q29QU8	NM_001260060 NM_001260060.2 NP_001246989 NP_001246989.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG45263-RF	FBtr0346728	5385	711aa	FBpp0312337	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUR3	NM_001316568 NM_001316568.1 NP_001303497 NP_001303497.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG45263-RB	FBtr0345457	3658	732aa	FBpp0311575	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5X504 Q8T916 Q9VHQ8	NM_169223 NM_169223.4 NP_731247 NP_731247.3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays