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DB built by FlyBase

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Gene: Ptp61F FBgn0267487

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Description

Protein tyrosine phosphatase 61F

Gene Synonyms

Location

Primary_assembly 3L: 1,342,493-1,475,257 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 5 transcripts (splice variants), 123 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Ptp61F-RA	FBtr0072718	2115	548aa	FBpp0072602	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3DMI1 I0B1P6 Q9W0G1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Ptp61F-RE	FBtr0310161	5167	431aa	FBpp0301846	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRH4	-	-
Ptp61F-RD	FBtr0072719	3495	431aa	FBpp0072603	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A420 Q8IRH4	-	-
Ptp61F-RB	FBtr0072717	1835	535aa	FBpp0072601	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Ptp61F-RC	FBtr0072716	1796	530aa	FBpp0072600	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-

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Summary

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