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DB built by FlyBase

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Gene: prage FBgn0283741

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Description

prage

Gene Synonyms

Location

Primary_assembly X: 1,773,719-1,853,667 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 11 transcripts (splice variants), 108 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
prage-RJ	FBtr0309969	3749	852aa	FBpp0301696	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C7LAE5 O76875	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
prage-RF	FBtr0302659	3806	761aa	FBpp0291799	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q960E5 Q9W557	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
prage-RK	FBtr0332901	3700	742aa	FBpp0305122	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRW9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
prage-RE	FBtr0302658	3629	852aa	FBpp0291798	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C7LAE5	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
prage-RB	FBtr0302654	3467	787aa	FBpp0291794	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T023 Q9W558	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
prage-RG	FBtr0309966	3319	742aa	FBpp0301693	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRW9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
prage-RC	FBtr0302656	3100	761aa	FBpp0291796	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W557	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
prage-RD	FBtr0302655	2934	742aa	FBpp0291795	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRW9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
prage-RA	FBtr0302657	2876	761aa	FBpp0291797	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W557	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
prage-RI	FBtr0309968	2821	742aa	FBpp0301695	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRW9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
prage-RH	FBtr0309967	2784	742aa	FBpp0301694	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRW9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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