Description

voltage-gated sodium channel [Source:VB Community Annotation;Acc:AGAP004707]

Synonyms

VSC, kdr

Location
About this transcript

This transcript has 31 exons, is annotated with 59 domains and features, is associated with 22 variations and maps to 40 oligo probes.

Gene

This transcript is a product of gene AGAP004707 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
paraAGAP004707-RA63572118aaAGAP004707-PA
 
Protein coding
A0A0G2YAL2 A0A1B2JJS1 A0A1B2JJS6
A0A1B2JJT7 A5I843 Q5PTA1
Q5PTB3 Q7PJH0
XM_001689051.1
XM_318122.4
XM_554647.3
XP_318122.4
paraAGAP004707-RB62792092aaAGAP004707-PB
 
Protein coding
A0A1B2JJT9 A0A1B2JJV9 A7ULH2
A7UUW1 C6F086 O45207
Q5PTB5 Q5PTB7 Q5PTB9
Q5PTC1 Q5PTC3 Q66RC1
Q66RD9
XM_001689051.1
XM_318122.4
XM_554647.3
XP_001689103.1
paraAGAP004707-RC62792092aaAGAP004707-PC
 
Protein coding
Q5TPQ2 XM_001689051.1
XM_318122.4
XM_554647.3
XP_554647.3
Statistics

Exons: 31, Coding exons: 31, Transcript length: 6,357 bps, Translation length: 2,118 residues

Version

AGAP004707-RA.

Type

Known protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays