Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LOC412865

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Description

collagen alpha-2(IX) chain, transcript variant X7

Location

Primary_assembly CM009941.2: 9,106,725-9,434,831 forward strand.

Amel_HAv3.1:CM009941.2

About this gene

This gene has 14 transcripts (splice variants), 288 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	Flags
-	XM_006564334	5871	1177aa	XP_006564397	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A088A7E2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	XM_016914908	6873	1006aa	XP_016770397	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A088A7D9	-
-	XM_006564342	6786	977aa	XP_006564405	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_006564335	5859	1173aa	XP_006564398	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_006564336	5856	1172aa	XP_006564399	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_006564337	5841	1167aa	XP_006564400	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_006564338	5829	1163aa	XP_006564401	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_006564339	5826	1162aa	XP_006564402	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_006564340	5784	1148aa	XP_006564403	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_006564341	5769	1143aa	XP_006564404	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A088A7D8	-
-	XM_026444004	4973	1085aa	XP_026299789	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_016914909	4891	986aa	XP_016770398	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A088A7E1	-
-	XM_026444005	4804	957aa	XP_026299790	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444006	4235	926aa	XP_026299791	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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