Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: hrpa-1 WBGene00001999

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Description

Heteroous nuclear ribonucleoprotein A1 [Source:NCBI gene;Acc:177101]

Location

Chromosome IV: 3,336,920-3,338,867 reverse strand.

WBcel235:BX284604.4

About this gene

This gene has 10 transcripts (splice variants), 67 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
hrpa-1-210	F42A6.7d.1	1223	347aa	F42A6.7d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F42A6.7a.2	1555	346aa	F42A6.7a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F42A6.7b.4	1547	309aa	F42A6.7b.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	-
-	F42A6.7b.1	1542	309aa	F42A6.7b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	-
-	F42A6.7b.3	1498	309aa	F42A6.7b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	-
-	F42A6.7a.1	1473	346aa	F42A6.7a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F42A6.7c.1	1380	308aa	F42A6.7c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	-
-	F42A6.7b.2	1371	309aa	F42A6.7b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	-
-	F42A6.7c.2	1322	308aa	F42A6.7c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	-
-	F42A6.7d.2	1187	347aa	F42A6.7d.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q22037	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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