Summary
- Splice variants
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Pan-taxonomic Compara
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DB built by WormBase

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Gene: mdt-17 WBGene00007017

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Description

Mediator of RNA polymerase II transcription subunit 17 [Source:NCBI gene;Acc:180325]

Location

Chromosome V: 20,250,806-20,267,247 reverse strand.

WBcel235:BX284605.5

About this gene

This gene has 4 transcripts (splice variants) and 73 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y113G7B.18b.1	3182	667aa	Y113G7B.18b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NAL4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y113G7B.18a.2	3168	664aa	Y113G7B.18a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NAL4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y113G7B.18b.2	2225	667aa	Y113G7B.18b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NAL4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y113G7B.18a.1	2216	664aa	Y113G7B.18a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NAL4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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