Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Metazoan Compara
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- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Molecular interactions
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External references
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ID History
- Gene history

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DB built by WormBase

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Gene: C01A2.1 WBGene00007213

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Description

Uncharacterized protein [Source:NCBI gene;Acc:182049]

Location

Chromosome I: 13,409,897-13,411,554 reverse strand.

WBcel235:BX284601.5

About this gene

This gene has 4 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C01A2.1a.1	1169	199aa	C01A2.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MU45	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	C01A2.1c.1	1313	107aa	C01A2.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MU47	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C01A2.1c.2	1211	107aa	C01A2.1c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MU47	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C01A2.1b.1	351	116aa	C01A2.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MU48	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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