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DB built by WormBase

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Gene: ppfr-1 WBGene00008878

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Description

Serine/threonine-protein phosphatase 4 regulatory subunit 1 [Source:NCBI gene;Acc:172761]

Location

Chromosome I: 9,364,099-9,389,982 reverse strand.

WBcel235:BX284601.5

About this gene

This gene has 4 transcripts (splice variants), 64 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F16A11.3d.1	4689	1562aa	F16A11.3d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5ECH5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F16A11.3a.1	5139	1490aa	F16A11.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5ECH5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F16A11.3b.1	4828	1364aa	F16A11.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5ECH5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F16A11.3c.1	3141	1046aa	F16A11.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EFN0	-	-

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Summary

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