Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
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Molecular interactions
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External references
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ID History
- Gene history

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DB built by WormBase

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Gene: Y17G7B.20 WBGene00012471

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Description

Uncharacterized protein [Source:NCBI gene;Acc:174837]

Location

Chromosome II: 11,977,776-11,979,844 reverse strand.

WBcel235:BX284602.5

About this gene

This gene has 7 transcripts (splice variants) and 5 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y17G7B.20a.1	1541	294aa	Y17G7B.20a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4E8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y17G7B.20c.1	1578	268aa	Y17G7B.20c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8XJ47	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y17G7B.20c.3	1532	268aa	Y17G7B.20c.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8XJ47	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y17G7B.20c.2	1500	268aa	Y17G7B.20c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8XJ47	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y17G7B.20a.3	1455	294aa	Y17G7B.20a.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4E8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y17G7B.20a.2	1419	294aa	Y17G7B.20a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4E8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y17G7B.20b.1	750	249aa	Y17G7B.20b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8XJ46	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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