Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: twk-49 WBGene00019904

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Description

Ion_trans_2 domain-containing protein [Source:NCBI gene;Acc:187626]

Location

Chromosome II: 6,492,785-6,499,167 reverse strand.

WBcel235:BX284602.5

About this gene

This gene has 4 transcripts (splice variants), 254 orthologues and 47 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	R05G9.2a.2	2168	315aa	R05G9.2a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q966H2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	R05G9.2a.1	2074	315aa	R05G9.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q966H2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	R05G9.2a.3	2035	315aa	R05G9.2a.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q966H2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	R05G9.2b.1	1014	337aa	R05G9.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q65XY3	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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