Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
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- Structural variants
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ID History
- Gene history

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DB built by WormBase

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Gene: cup-5 WBGene00000846

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Description

CUP-5L [Source:UniProtKB/TrEMBL;Acc:Q8T666]

Location

Chromosome III: 7,584,181-7,591,570 forward strand.

WBcel235:BX284603.4

About this gene

This gene has 9 transcripts (splice variants) and 138 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	R13A5.1b.2	2589	644aa	R13A5.1b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8WSP3	NP_498664
-	R13A5.1b.1	2564	644aa	R13A5.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8WSP3	NP_498664	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
-	R13A5.1a.2	2266	607aa	R13A5.1a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D7UU24	NP_001022719
-	R13A5.1e.2	2261	668aa	R13A5.1e.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T666	NP_001254945
-	R13A5.1d.2	2249	664aa	R13A5.1d.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYJ9	NP_001022722
-	R13A5.1a.1	2241	607aa	R13A5.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D7UU24	NP_001022719	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	R13A5.1e.1	2236	668aa	R13A5.1e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T666	NP_001254945
-	R13A5.1d.1	2224	664aa	R13A5.1d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYJ9	NP_001022722
-	R13A5.1c.1	2176	629aa	R13A5.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYK0	NP_001022721	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2

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Summary

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Gene-based displays